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Cluster: HRGMv2_1476_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1476_6 HRGMv2_1476_6_44 50173 51342 - CE9
STP HRGMv2_1476_6 HRGMv2_1476_6_45 51462 52628 - SIS | SIS
TF HRGMv2_1476_6 HRGMv2_1476_6_46 52743 53474 - GntR
TC HRGMv2_1476_6 HRGMv2_1476_6_47 53659 54741 - 4.A.6.1.4
TC HRGMv2_1476_6 HRGMv2_1476_6_48 54731 55531 - 4.A.6.1.4
TC HRGMv2_1476_6 HRGMv2_1476_6_49 55622 56104 - 4.A.6.1.4
pfam HRGMv2_1476_6 HRGMv2_1476_6_50 56141 56422 - YajC
TC HRGMv2_1476_6 HRGMv2_1476_6_51 56422 56865 - 4.A.6.1.12
Gene ID: HRGMv2_1476_6_44
Type: CAZyme
Location: 50173 - 51342 (-)
Gene ID: HRGMv2_1476_6_45
Type: STP
Location: 51462 - 52628 (-)
Gene ID: HRGMv2_1476_6_46
Type: TF
Location: 52743 - 53474 (-)
Gene ID: HRGMv2_1476_6_47
Type: TC
Location: 53659 - 54741 (-)
Gene ID: HRGMv2_1476_6_48
Type: TC
Location: 54731 - 55531 (-)
Gene ID: HRGMv2_1476_6_49
Type: TC
Location: 55622 - 56104 (-)
Gene ID: HRGMv2_1476_6_50
Type: pfam
Location: 56141 - 56422 (-)
Gene ID: HRGMv2_1476_6_51
Type: TC
Location: 56422 - 56865 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1476_6_50 vegan > omnivore 1.10644 0.00566

🧭 Explore Read Mapping of CGC

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