dbCAN HGM

Cluster: HRGMv2_1472_CGC5

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	HRGMv2_1472_20	HRGMv2_1472_20_12	17141	18976	+	GT2
pfam	HRGMv2_1472_20	HRGMv2_1472_20_13	19076	20263	+	LicD
CAZyme	HRGMv2_1472_20	HRGMv2_1472_20_14	20296	22137	+	GT2
CAZyme	HRGMv2_1472_20	HRGMv2_1472_20_15	22169	23098	-	GT81
TC	HRGMv2_1472_20	HRGMv2_1472_20_16	23260	24105	+	3.A.1.103.6
TC	HRGMv2_1472_20	HRGMv2_1472_20_17	24118	24885	+	3.A.1.103.1

Gene ID: HRGMv2_1472_20_12
Type: CAZyme
Location: 17141 - 18976 (+)

Gene ID: HRGMv2_1472_20_13
Type: pfam
Location: 19076 - 20263 (+)

Gene ID: HRGMv2_1472_20_14
Type: CAZyme
Location: 20296 - 22137 (+)

Gene ID: HRGMv2_1472_20_15
Type: CAZyme
Location: 22169 - 23098 (-)

Gene ID: HRGMv2_1472_20_16
Type: TC
Location: 23260 - 24105 (+)

Gene ID: HRGMv2_1472_20_17
Type: TC
Location: 24118 - 24885 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1472_20_12	vegan > omnivore	10.16006	0.00701
HRGMv2_1472_20_14	vegan > omnivore	17.34874	0.00701
HRGMv2_1472_20_14	vegetarian > omnivore	12.52340	0.02813
HRGMv2_1472_20_15	vegan > omnivore	1.80202	0.00701
HRGMv2_1472_20_16	vegan > omnivore	2.04937	0.00701