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Cluster: HRGMv2_1472_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1472_15 HRGMv2_1472_15_8 8609 9985 - GH13_20
TC HRGMv2_1472_15 HRGMv2_1472_15_9 10139 11335 - 2.A.1.2.18
TC HRGMv2_1472_15 HRGMv2_1472_15_10 11460 13820 - 9.A.8.1.6
peptidase HRGMv2_1472_15 HRGMv2_1472_15_11 14293 15192 - S09.UPW
TC HRGMv2_1472_15 HRGMv2_1472_15_12 15361 16002 + 4.A.1.2.6
pfam HRGMv2_1472_15 HRGMv2_1472_15_13 16183 17586 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_1472_15 HRGMv2_1472_15_14 17836 18621 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1472_15 HRGMv2_1472_15_15 18782 19762 + 3.A.1.34.1
TC HRGMv2_1472_15 HRGMv2_1472_15_16 19967 20890 + 3.A.1.34.1
TC HRGMv2_1472_15 HRGMv2_1472_15_17 20883 21677 + 3.A.1.34.1
pfam HRGMv2_1472_15 HRGMv2_1472_15_18 21836 23860 + Metallophos | 5_nucleotid_C
TC HRGMv2_1472_15 HRGMv2_1472_15_19 23988 24755 + 1.A.23.4.10
Gene ID: HRGMv2_1472_15_8
Type: CAZyme
Location: 8609 - 9985 (-)
Gene ID: HRGMv2_1472_15_9
Type: TC
Location: 10139 - 11335 (-)
Gene ID: HRGMv2_1472_15_10
Type: TC
Location: 11460 - 13820 (-)
Gene ID: HRGMv2_1472_15_11
Type: peptidase
Location: 14293 - 15192 (-)
Gene ID: HRGMv2_1472_15_12
Type: TC
Location: 15361 - 16002 (+)
Gene ID: HRGMv2_1472_15_13
Type: pfam
Location: 16183 - 17586 (+)
Gene ID: HRGMv2_1472_15_14
Type:
Location: 17836 - 18621 (+)
Gene ID: HRGMv2_1472_15_15
Type: TC
Location: 18782 - 19762 (+)
Gene ID: HRGMv2_1472_15_16
Type: TC
Location: 19967 - 20890 (+)
Gene ID: HRGMv2_1472_15_17
Type: TC
Location: 20883 - 21677 (+)
Gene ID: HRGMv2_1472_15_18
Type: pfam
Location: 21836 - 23860 (+)
Gene ID: HRGMv2_1472_15_19
Type: TC
Location: 23988 - 24755 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1472_15_18 vegan > omnivore 1.83334 0.00701
HRGMv2_1472_15_18 vegetarian > omnivore 1.36052 0.01287

🧭 Explore Read Mapping of CGC

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