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Cluster: HRGMv2_1472_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1472_9 HRGMv2_1472_9_15 14042 14485 + 4.A.6.1.16
pfam HRGMv2_1472_9 HRGMv2_1472_9_16 14485 14766 + YajC
TC HRGMv2_1472_9 HRGMv2_1472_9_17 14803 15285 + 4.A.6.1.4
TC HRGMv2_1472_9 HRGMv2_1472_9_18 15376 16176 + 4.A.6.1.4
TC HRGMv2_1472_9 HRGMv2_1472_9_19 16166 17248 + 4.A.6.1.4
TF HRGMv2_1472_9 HRGMv2_1472_9_20 17434 18165 + GntR
STP HRGMv2_1472_9 HRGMv2_1472_9_21 18280 19446 + SIS | SIS
CAZyme HRGMv2_1472_9 HRGMv2_1472_9_22 19564 20733 + CE9
Gene ID: HRGMv2_1472_9_15
Type: TC
Location: 14042 - 14485 (+)
Gene ID: HRGMv2_1472_9_16
Type: pfam
Location: 14485 - 14766 (+)
Gene ID: HRGMv2_1472_9_17
Type: TC
Location: 14803 - 15285 (+)
Gene ID: HRGMv2_1472_9_18
Type: TC
Location: 15376 - 16176 (+)
Gene ID: HRGMv2_1472_9_19
Type: TC
Location: 16166 - 17248 (+)
Gene ID: HRGMv2_1472_9_20
Type: TF
Location: 17434 - 18165 (+)
Gene ID: HRGMv2_1472_9_21
Type: STP
Location: 18280 - 19446 (+)
Gene ID: HRGMv2_1472_9_22
Type: CAZyme
Location: 19564 - 20733 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1472_9_16 vegan > omnivore 1.02767 0.00701

🧭 Explore Read Mapping of CGC

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