Cluster: HRGMv2_1472_CGC17
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1472
- CGC Family ID: CGCFAM_02159
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1472_52 | HRGMv2_1472_52_16 | 14054 | 20467 | - | GH31_18 |
| TF | HRGMv2_1472_52 | HRGMv2_1472_52_17 | 20979 | 21419 | - | MarR |
| NULL(UNKNOWN) | HRGMv2_1472_52 | HRGMv2_1472_52_18 | 21524 | 21850 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1472_52 | HRGMv2_1472_52_19 | 22046 | 22873 | - | 4.A.6.1.6 |
| pfam | HRGMv2_1472_52 | HRGMv2_1472_52_20 | 22873 | 23409 | - | EII-Sor |
| TC | HRGMv2_1472_52 | HRGMv2_1472_52_21 | 23802 | 24290 | - | 4.A.6.1.9 |
Gene ID: HRGMv2_1472_52_16
Type: CAZyme
Location: 14054 - 20467 (-)
Type: CAZyme
Location: 14054 - 20467 (-)
Gene ID: HRGMv2_1472_52_17
Type: TF
Location: 20979 - 21419 (-)
Type: TF
Location: 20979 - 21419 (-)
Gene ID: HRGMv2_1472_52_18
Type:
Location: 21524 - 21850 (-)
Type:
Location: 21524 - 21850 (-)
Gene ID: HRGMv2_1472_52_19
Type: TC
Location: 22046 - 22873 (-)
Type: TC
Location: 22046 - 22873 (-)
Gene ID: HRGMv2_1472_52_20
Type: pfam
Location: 22873 - 23409 (-)
Type: pfam
Location: 22873 - 23409 (-)
Gene ID: HRGMv2_1472_52_21
Type: TC
Location: 23802 - 24290 (-)
Type: TC
Location: 23802 - 24290 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019414025
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1472_52_16 | vegetarian > omnivore | 1.38533 | 0.02813 |
| HRGMv2_1472_52_16 | vegetarian > vegan | 2.08221 | 0.01195 |