Cluster: HRGMv2_1472_CGC15
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1472
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1472_39 | HRGMv2_1472_39_5 | 3581 | 4645 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_1472_39 | HRGMv2_1472_39_6 | 4642 | 4974 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1472_39 | HRGMv2_1472_39_7 | 4974 | 5726 | - | GT32 |
| STP | HRGMv2_1472_39 | HRGMv2_1472_39_8 | 5749 | 6993 | - | Fer4 |
| pfam | HRGMv2_1472_39 | HRGMv2_1472_39_9 | 7002 | 8189 | - | PS_pyruv_trans |
| CAZyme | HRGMv2_1472_39 | HRGMv2_1472_39_10 | 8199 | 9233 | - | GT4 |
| TC | HRGMv2_1472_39 | HRGMv2_1472_39_11 | 9303 | 10091 | - | 9.B.18.1.2 |
Gene ID: HRGMv2_1472_39_5
Type: CAZyme
Location: 3581 - 4645 (-)
Type: CAZyme
Location: 3581 - 4645 (-)
Gene ID: HRGMv2_1472_39_6
Type:
Location: 4642 - 4974 (-)
Type:
Location: 4642 - 4974 (-)
Gene ID: HRGMv2_1472_39_7
Type: CAZyme
Location: 4974 - 5726 (-)
Type: CAZyme
Location: 4974 - 5726 (-)
Gene ID: HRGMv2_1472_39_8
Type: STP
Location: 5749 - 6993 (-)
Type: STP
Location: 5749 - 6993 (-)
Gene ID: HRGMv2_1472_39_9
Type: pfam
Location: 7002 - 8189 (-)
Type: pfam
Location: 7002 - 8189 (-)
Gene ID: HRGMv2_1472_39_10
Type: CAZyme
Location: 8199 - 9233 (-)
Type: CAZyme
Location: 8199 - 9233 (-)
Gene ID: HRGMv2_1472_39_11
Type: TC
Location: 9303 - 10091 (-)
Type: TC
Location: 9303 - 10091 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019414025
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.