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Cluster: HRGMv2_1471_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1471_22 HRGMv2_1471_22_81 82293 82736 + 4.A.6.1.16
pfam HRGMv2_1471_22 HRGMv2_1471_22_82 82736 83017 + YajC
TC HRGMv2_1471_22 HRGMv2_1471_22_83 83054 83536 + 4.A.6.1.4
TC HRGMv2_1471_22 HRGMv2_1471_22_84 83627 84427 + 4.A.6.1.4
TC HRGMv2_1471_22 HRGMv2_1471_22_85 84417 85499 + 4.A.6.1.4
TF HRGMv2_1471_22 HRGMv2_1471_22_86 85685 86416 + GntR
STP HRGMv2_1471_22 HRGMv2_1471_22_87 86531 87697 + SIS | SIS
CAZyme HRGMv2_1471_22 HRGMv2_1471_22_88 87815 88984 + CE9
Gene ID: HRGMv2_1471_22_81
Type: TC
Location: 82293 - 82736 (+)
Gene ID: HRGMv2_1471_22_82
Type: pfam
Location: 82736 - 83017 (+)
Gene ID: HRGMv2_1471_22_83
Type: TC
Location: 83054 - 83536 (+)
Gene ID: HRGMv2_1471_22_84
Type: TC
Location: 83627 - 84427 (+)
Gene ID: HRGMv2_1471_22_85
Type: TC
Location: 84417 - 85499 (+)
Gene ID: HRGMv2_1471_22_86
Type: TF
Location: 85685 - 86416 (+)
Gene ID: HRGMv2_1471_22_87
Type: STP
Location: 86531 - 87697 (+)
Gene ID: HRGMv2_1471_22_88
Type: CAZyme
Location: 87815 - 88984 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1471_22_82 vegan > omnivore 1.04916 0.00566

🧭 Explore Read Mapping of CGC

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