dbCAN Logo

Cluster: HRGMv2_1471_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1471_16 HRGMv2_1471_16_35 37690 38484 - 3.A.1.34.1
TC HRGMv2_1471_16 HRGMv2_1471_16_36 38477 39400 - 3.A.1.34.1
TC HRGMv2_1471_16 HRGMv2_1471_16_37 39605 40585 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_1471_16 HRGMv2_1471_16_38 40746 41531 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1471_16 HRGMv2_1471_16_39 41781 43184 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_1471_16 HRGMv2_1471_16_40 43366 43929 - 4.A.1.2.6
peptidase HRGMv2_1471_16 HRGMv2_1471_16_41 44174 45073 + S09.UPW
NULL(UNKNOWN) HRGMv2_1471_16 HRGMv2_1471_16_42 45121 45441 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1471_16 HRGMv2_1471_16_43 45563 47923 + 9.A.8.1.6
TC HRGMv2_1471_16 HRGMv2_1471_16_44 48238 49902 + 4.A.1.1.3
TF HRGMv2_1471_16 HRGMv2_1471_16_45 49965 50717 - HTH_6
CAZyme HRGMv2_1471_16 HRGMv2_1471_16_46 50893 52266 + GH4
NULL(UNKNOWN) HRGMv2_1471_16 HRGMv2_1471_16_47 52432 53184 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1471_16 HRGMv2_1471_16_48 53360 54556 + 2.A.1.2.18
CAZyme HRGMv2_1471_16 HRGMv2_1471_16_49 54711 56087 + GH13_20
Gene ID: HRGMv2_1471_16_35
Type: TC
Location: 37690 - 38484 (-)
Gene ID: HRGMv2_1471_16_36
Type: TC
Location: 38477 - 39400 (-)
Gene ID: HRGMv2_1471_16_37
Type: TC
Location: 39605 - 40585 (-)
Gene ID: HRGMv2_1471_16_38
Type:
Location: 40746 - 41531 (-)
Gene ID: HRGMv2_1471_16_39
Type: pfam
Location: 41781 - 43184 (-)
Gene ID: HRGMv2_1471_16_40
Type: TC
Location: 43366 - 43929 (-)
Gene ID: HRGMv2_1471_16_41
Type: peptidase
Location: 44174 - 45073 (+)
Gene ID: HRGMv2_1471_16_42
Type:
Location: 45121 - 45441 (+)
Gene ID: HRGMv2_1471_16_43
Type: TC
Location: 45563 - 47923 (+)
Gene ID: HRGMv2_1471_16_44
Type: TC
Location: 48238 - 49902 (+)
Gene ID: HRGMv2_1471_16_45
Type: TF
Location: 49965 - 50717 (-)
Gene ID: HRGMv2_1471_16_46
Type: CAZyme
Location: 50893 - 52266 (+)
Gene ID: HRGMv2_1471_16_47
Type:
Location: 52432 - 53184 (+)
Gene ID: HRGMv2_1471_16_48
Type: TC
Location: 53360 - 54556 (+)
Gene ID: HRGMv2_1471_16_49
Type: CAZyme
Location: 54711 - 56087 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1471_16_46 vegan > omnivore 1.48805 0.00566
HRGMv2_1471_16_47 vegan > omnivore 1.72663 0.00566

🧭 Explore Read Mapping of CGC

← Back to Cluster List