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Cluster: HRGMv2_1470_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1470_12 HRGMv2_1470_12_13 13593 14516 - GT2
NULL(UNKNOWN) HRGMv2_1470_12 HRGMv2_1470_12_14 14530 15024 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1470_12 HRGMv2_1470_12_15 15021 16124 - GT4
pfam HRGMv2_1470_12 HRGMv2_1470_12_16 16372 17262 - ATPgrasp_TupA
CAZyme HRGMv2_1470_12 HRGMv2_1470_12_17 17259 17750 - GT1
pfam HRGMv2_1470_12 HRGMv2_1470_12_18 17763 18236 - Alg14
pfam HRGMv2_1470_12 HRGMv2_1470_12_19 18240 19499 - UDPG_MGDP_dh | NAD_Gly3P_dh_N | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
TC HRGMv2_1470_12 HRGMv2_1470_12_20 19538 20338 - 9.B.18.1.2
Gene ID: HRGMv2_1470_12_13
Type: CAZyme
Location: 13593 - 14516 (-)
Gene ID: HRGMv2_1470_12_14
Type:
Location: 14530 - 15024 (-)
Gene ID: HRGMv2_1470_12_15
Type: CAZyme
Location: 15021 - 16124 (-)
Gene ID: HRGMv2_1470_12_16
Type: pfam
Location: 16372 - 17262 (-)
Gene ID: HRGMv2_1470_12_17
Type: CAZyme
Location: 17259 - 17750 (-)
Gene ID: HRGMv2_1470_12_18
Type: pfam
Location: 17763 - 18236 (-)
Gene ID: HRGMv2_1470_12_19
Type: pfam
Location: 18240 - 19499 (-)
Gene ID: HRGMv2_1470_12_20
Type: TC
Location: 19538 - 20338 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1470_12_19 vegan > omnivore 1.00657 0.01425

🧭 Explore Read Mapping of CGC

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