Cluster: HRGMv2_1470_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1470
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1470_31 | HRGMv2_1470_31_247 | 299854 | 300978 | - | GH172 |
| pfam | HRGMv2_1470_31 | HRGMv2_1470_31_248 | 300991 | 301389 | - | EIIA-man |
| TC | HRGMv2_1470_31 | HRGMv2_1470_31_249 | 301416 | 302249 | - | 4.A.6.1.13 |
| TC | HRGMv2_1470_31 | HRGMv2_1470_31_250 | 302252 | 303037 | - | 4.A.6.1.13 |
| TC | HRGMv2_1470_31 | HRGMv2_1470_31_251 | 303047 | 303520 | - | 4.A.6.1.18 |
Gene ID: HRGMv2_1470_31_247
Type: CAZyme
Location: 299854 - 300978 (-)
Type: CAZyme
Location: 299854 - 300978 (-)
Gene ID: HRGMv2_1470_31_248
Type: pfam
Location: 300991 - 301389 (-)
Type: pfam
Location: 300991 - 301389 (-)
Gene ID: HRGMv2_1470_31_249
Type: TC
Location: 301416 - 302249 (-)
Type: TC
Location: 301416 - 302249 (-)
Gene ID: HRGMv2_1470_31_250
Type: TC
Location: 302252 - 303037 (-)
Type: TC
Location: 302252 - 303037 (-)
Gene ID: HRGMv2_1470_31_251
Type: TC
Location: 303047 - 303520 (-)
Type: TC
Location: 303047 - 303520 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019414045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1470_31_251 | vegan > omnivore | 1.04707 | 0.01425 |