Cluster: HRGMv2_1470_CGC14
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1470
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1470_30 | HRGMv2_1470_30_89 | 109119 | 111446 | - | 9.A.8.1.6 |
| TC | HRGMv2_1470_30 | HRGMv2_1470_30_90 | 111570 | 111791 | - | 9.A.8.1.6 |
| STP | HRGMv2_1470_30 | HRGMv2_1470_30_91 | 111831 | 112073 | - | FeoA |
| STP | HRGMv2_1470_30 | HRGMv2_1470_30_92 | 112259 | 112507 | - | PTS-HPr |
| TC | HRGMv2_1470_30 | HRGMv2_1470_30_93 | 112929 | 114392 | - | 2.A.3.7.4 |
| NULL(UNKNOWN) | HRGMv2_1470_30 | HRGMv2_1470_30_94 | 114545 | 115000 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1470_30 | HRGMv2_1470_30_95 | 115004 | 118012 | - | GH2 |
Gene ID: HRGMv2_1470_30_89
Type: TC
Location: 109119 - 111446 (-)
Type: TC
Location: 109119 - 111446 (-)
Gene ID: HRGMv2_1470_30_90
Type: TC
Location: 111570 - 111791 (-)
Type: TC
Location: 111570 - 111791 (-)
Gene ID: HRGMv2_1470_30_91
Type: STP
Location: 111831 - 112073 (-)
Type: STP
Location: 111831 - 112073 (-)
Gene ID: HRGMv2_1470_30_92
Type: STP
Location: 112259 - 112507 (-)
Type: STP
Location: 112259 - 112507 (-)
Gene ID: HRGMv2_1470_30_93
Type: TC
Location: 112929 - 114392 (-)
Type: TC
Location: 112929 - 114392 (-)
Gene ID: HRGMv2_1470_30_94
Type:
Location: 114545 - 115000 (-)
Type:
Location: 114545 - 115000 (-)
Gene ID: HRGMv2_1470_30_95
Type: CAZyme
Location: 115004 - 118012 (-)
Type: CAZyme
Location: 115004 - 118012 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019414045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.