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Cluster: HRGMv2_1470_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1470_26 HRGMv2_1470_26_1 625 1068 + 4.A.6.1.16
pfam HRGMv2_1470_26 HRGMv2_1470_26_2 1068 1349 + YajC
TC HRGMv2_1470_26 HRGMv2_1470_26_3 1386 1868 + 4.A.6.1.4
TC HRGMv2_1470_26 HRGMv2_1470_26_4 1959 2759 + 4.A.6.1.4
TC HRGMv2_1470_26 HRGMv2_1470_26_5 2749 3831 + 4.A.6.1.4
TF HRGMv2_1470_26 HRGMv2_1470_26_6 4017 4748 + GntR
STP HRGMv2_1470_26 HRGMv2_1470_26_7 4863 6029 + SIS | SIS
CAZyme HRGMv2_1470_26 HRGMv2_1470_26_8 6147 7316 + CE9
Gene ID: HRGMv2_1470_26_1
Type: TC
Location: 625 - 1068 (+)
Gene ID: HRGMv2_1470_26_2
Type: pfam
Location: 1068 - 1349 (+)
Gene ID: HRGMv2_1470_26_3
Type: TC
Location: 1386 - 1868 (+)
Gene ID: HRGMv2_1470_26_4
Type: TC
Location: 1959 - 2759 (+)
Gene ID: HRGMv2_1470_26_5
Type: TC
Location: 2749 - 3831 (+)
Gene ID: HRGMv2_1470_26_6
Type: TF
Location: 4017 - 4748 (+)
Gene ID: HRGMv2_1470_26_7
Type: STP
Location: 4863 - 6029 (+)
Gene ID: HRGMv2_1470_26_8
Type: CAZyme
Location: 6147 - 7316 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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