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Cluster: HRGMv2_1470_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1470_24 HRGMv2_1470_24_87 100419 101183 + 9.B.18.1.2
CAZyme HRGMv2_1470_24 HRGMv2_1470_24_88 101187 102104 + GT2
pfam HRGMv2_1470_24 HRGMv2_1470_24_89 102148 103419 + UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme HRGMv2_1470_24 HRGMv2_1470_24_90 103425 104717 + GT4
pfam HRGMv2_1470_24 HRGMv2_1470_24_91 104717 105664 + C5-epim_C
CAZyme HRGMv2_1470_24 HRGMv2_1470_24_92 105661 106764 + GT4
pfam HRGMv2_1470_24 HRGMv2_1470_24_93 106761 107849 + EpsG
pfam HRGMv2_1470_24 HRGMv2_1470_24_94 107993 108940 + ATPgrasp_TupA
TC HRGMv2_1470_24 HRGMv2_1470_24_95 109025 110491 + 2.A.66.2.23
Gene ID: HRGMv2_1470_24_87
Type: TC
Location: 100419 - 101183 (+)
Gene ID: HRGMv2_1470_24_88
Type: CAZyme
Location: 101187 - 102104 (+)
Gene ID: HRGMv2_1470_24_89
Type: pfam
Location: 102148 - 103419 (+)
Gene ID: HRGMv2_1470_24_90
Type: CAZyme
Location: 103425 - 104717 (+)
Gene ID: HRGMv2_1470_24_91
Type: pfam
Location: 104717 - 105664 (+)
Gene ID: HRGMv2_1470_24_92
Type: CAZyme
Location: 105661 - 106764 (+)
Gene ID: HRGMv2_1470_24_93
Type: pfam
Location: 106761 - 107849 (+)
Gene ID: HRGMv2_1470_24_94
Type: pfam
Location: 107993 - 108940 (+)
Gene ID: HRGMv2_1470_24_95
Type: TC
Location: 109025 - 110491 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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