dbCAN Logo

Cluster: HRGMv2_1469_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1469_5 HRGMv2_1469_5_26 29154 30323 - CE9
STP HRGMv2_1469_5 HRGMv2_1469_5_27 30441 31607 - SIS | SIS
TF HRGMv2_1469_5 HRGMv2_1469_5_28 31722 32453 - GntR
TC HRGMv2_1469_5 HRGMv2_1469_5_29 32639 33721 - 4.A.6.1.4
TC HRGMv2_1469_5 HRGMv2_1469_5_30 33711 34511 - 4.A.6.1.4
TC HRGMv2_1469_5 HRGMv2_1469_5_31 34602 35084 - 4.A.6.1.4
pfam HRGMv2_1469_5 HRGMv2_1469_5_32 35121 35402 - YajC
TC HRGMv2_1469_5 HRGMv2_1469_5_33 35402 35845 - 4.A.6.1.16
Gene ID: HRGMv2_1469_5_26
Type: CAZyme
Location: 29154 - 30323 (-)
Gene ID: HRGMv2_1469_5_27
Type: STP
Location: 30441 - 31607 (-)
Gene ID: HRGMv2_1469_5_28
Type: TF
Location: 31722 - 32453 (-)
Gene ID: HRGMv2_1469_5_29
Type: TC
Location: 32639 - 33721 (-)
Gene ID: HRGMv2_1469_5_30
Type: TC
Location: 33711 - 34511 (-)
Gene ID: HRGMv2_1469_5_31
Type: TC
Location: 34602 - 35084 (-)
Gene ID: HRGMv2_1469_5_32
Type: pfam
Location: 35121 - 35402 (-)
Gene ID: HRGMv2_1469_5_33
Type: TC
Location: 35402 - 35845 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1469_5_32 vegan > omnivore 1.02526 0.00863

🧭 Explore Read Mapping of CGC

← Back to Cluster List