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Cluster: HRGMv2_1469_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1469_5 HRGMv2_1469_5_12 11881 12219 - 4.A.3.1.2
TF HRGMv2_1469_5 HRGMv2_1469_5_13 12434 13438 - LacI
TC HRGMv2_1469_5 HRGMv2_1469_5_14 13796 15565 + 4.A.3.1.1
CAZyme HRGMv2_1469_5 HRGMv2_1469_5_15 15632 17071 + GH1
TF HRGMv2_1469_5 HRGMv2_1469_5_16 17419 18420 - LacI
TC HRGMv2_1469_5 HRGMv2_1469_5_17 18706 20484 + 4.A.3.1.1
CAZyme HRGMv2_1469_5 HRGMv2_1469_5_18 20560 21981 + GH1
TF HRGMv2_1469_5 HRGMv2_1469_5_19 22556 23320 - HTH_DeoR
sulfatase HRGMv2_1469_5 HRGMv2_1469_5_20 23527 24579 + S1_4
TC HRGMv2_1469_5 HRGMv2_1469_5_21 24905 25387 - 4.A.6.1.3
Gene ID: HRGMv2_1469_5_12
Type: TC
Location: 11881 - 12219 (-)
Gene ID: HRGMv2_1469_5_13
Type: TF
Location: 12434 - 13438 (-)
Gene ID: HRGMv2_1469_5_14
Type: TC
Location: 13796 - 15565 (+)
Gene ID: HRGMv2_1469_5_15
Type: CAZyme
Location: 15632 - 17071 (+)
Gene ID: HRGMv2_1469_5_16
Type: TF
Location: 17419 - 18420 (-)
Gene ID: HRGMv2_1469_5_17
Type: TC
Location: 18706 - 20484 (+)
Gene ID: HRGMv2_1469_5_18
Type: CAZyme
Location: 20560 - 21981 (+)
Gene ID: HRGMv2_1469_5_19
Type: TF
Location: 22556 - 23320 (-)
Gene ID: HRGMv2_1469_5_20
Type: sulfatase
Location: 23527 - 24579 (+)
Gene ID: HRGMv2_1469_5_21
Type: TC
Location: 24905 - 25387 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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