Cluster: HRGMv2_1469_CGC15
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1469
- CGC Family ID: CGCFAM_00008
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1469_46 | HRGMv2_1469_46_2 | 1678 | 2445 | - | 3.A.1.103.1 |
| TC | HRGMv2_1469_46 | HRGMv2_1469_46_3 | 2457 | 3308 | - | 3.A.1.103.6 |
| pfam | HRGMv2_1469_46 | HRGMv2_1469_46_4 | 3398 | 5056 | - | DUF6020 |
| NULL(UNKNOWN) | HRGMv2_1469_46 | HRGMv2_1469_46_5 | 5325 | 5510 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1469_46 | HRGMv2_1469_46_6 | 5500 | 6294 | + | GT2 |
| CAZyme | HRGMv2_1469_46 | HRGMv2_1469_46_7 | 6300 | 7268 | + | GT2 |
| TC | HRGMv2_1469_46 | HRGMv2_1469_46_8 | 7252 | 9660 | + | 9.B.144.1.5 |
Gene ID: HRGMv2_1469_46_2
Type: TC
Location: 1678 - 2445 (-)
Type: TC
Location: 1678 - 2445 (-)
Gene ID: HRGMv2_1469_46_3
Type: TC
Location: 2457 - 3308 (-)
Type: TC
Location: 2457 - 3308 (-)
Gene ID: HRGMv2_1469_46_4
Type: pfam
Location: 3398 - 5056 (-)
Type: pfam
Location: 3398 - 5056 (-)
Gene ID: HRGMv2_1469_46_5
Type:
Location: 5325 - 5510 (+)
Type:
Location: 5325 - 5510 (+)
Gene ID: HRGMv2_1469_46_6
Type: CAZyme
Location: 5500 - 6294 (+)
Type: CAZyme
Location: 5500 - 6294 (+)
Gene ID: HRGMv2_1469_46_7
Type: CAZyme
Location: 6300 - 7268 (+)
Type: CAZyme
Location: 6300 - 7268 (+)
Gene ID: HRGMv2_1469_46_8
Type: TC
Location: 7252 - 9660 (+)
Type: TC
Location: 7252 - 9660 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019424965
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.