Cluster: HRGMv2_1469_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1469
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1469_23 | HRGMv2_1469_23_24 | 26147 | 27610 | + | 2.A.3.2.3 |
| NULL(UNKNOWN) | HRGMv2_1469_23 | HRGMv2_1469_23_25 | 28073 | 28393 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1469_23 | HRGMv2_1469_23_26 | 28515 | 30875 | + | 9.A.8.1.6 |
| TC | HRGMv2_1469_23 | HRGMv2_1469_23_27 | 30997 | 32193 | + | 2.A.1.2.18 |
| CAZyme | HRGMv2_1469_23 | HRGMv2_1469_23_28 | 32347 | 33723 | + | GH13_20 |
Gene ID: HRGMv2_1469_23_24
Type: TC
Location: 26147 - 27610 (+)
Type: TC
Location: 26147 - 27610 (+)
Gene ID: HRGMv2_1469_23_25
Type:
Location: 28073 - 28393 (+)
Type:
Location: 28073 - 28393 (+)
Gene ID: HRGMv2_1469_23_26
Type: TC
Location: 28515 - 30875 (+)
Type: TC
Location: 28515 - 30875 (+)
Gene ID: HRGMv2_1469_23_27
Type: TC
Location: 30997 - 32193 (+)
Type: TC
Location: 30997 - 32193 (+)
Gene ID: HRGMv2_1469_23_28
Type: CAZyme
Location: 32347 - 33723 (+)
Type: CAZyme
Location: 32347 - 33723 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019424965
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1469_23_24 | vegan > omnivore | 1.40997 | 0.00863 |