Cluster: HRGMv2_1468_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1468
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1468_17 | HRGMv2_1468_17_134 | 166357 | 169365 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_1468_17 | HRGMv2_1468_17_135 | 169369 | 169824 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1468_17 | HRGMv2_1468_17_136 | 169978 | 171441 | + | 2.A.3.7.4 |
| STP | HRGMv2_1468_17 | HRGMv2_1468_17_137 | 171863 | 172111 | + | PTS-HPr |
| STP | HRGMv2_1468_17 | HRGMv2_1468_17_138 | 172300 | 172542 | + | FeoA |
| TC | HRGMv2_1468_17 | HRGMv2_1468_17_139 | 172582 | 172803 | + | 9.A.8.1.6 |
| TC | HRGMv2_1468_17 | HRGMv2_1468_17_140 | 172927 | 175254 | + | 9.A.8.1.6 |
Gene ID: HRGMv2_1468_17_134
Type: CAZyme
Location: 166357 - 169365 (+)
Type: CAZyme
Location: 166357 - 169365 (+)
Gene ID: HRGMv2_1468_17_135
Type:
Location: 169369 - 169824 (+)
Type:
Location: 169369 - 169824 (+)
Gene ID: HRGMv2_1468_17_136
Type: TC
Location: 169978 - 171441 (+)
Type: TC
Location: 169978 - 171441 (+)
Gene ID: HRGMv2_1468_17_137
Type: STP
Location: 171863 - 172111 (+)
Type: STP
Location: 171863 - 172111 (+)
Gene ID: HRGMv2_1468_17_138
Type: STP
Location: 172300 - 172542 (+)
Type: STP
Location: 172300 - 172542 (+)
Gene ID: HRGMv2_1468_17_139
Type: TC
Location: 172582 - 172803 (+)
Type: TC
Location: 172582 - 172803 (+)
Gene ID: HRGMv2_1468_17_140
Type: TC
Location: 172927 - 175254 (+)
Type: TC
Location: 172927 - 175254 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019419505
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.