Cluster: HRGMv2_1468_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1468
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1468_4 | HRGMv2_1468_4_38 | 41345 | 42808 | + | 2.A.3.2.3 |
| NULL(UNKNOWN) | HRGMv2_1468_4 | HRGMv2_1468_4_39 | 43272 | 43592 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1468_4 | HRGMv2_1468_4_40 | 43714 | 46074 | + | 9.A.8.1.6 |
| TC | HRGMv2_1468_4 | HRGMv2_1468_4_41 | 46199 | 47383 | + | 2.A.1.2.18 |
| CAZyme | HRGMv2_1468_4 | HRGMv2_1468_4_42 | 47703 | 49079 | + | GH13_20 |
Gene ID: HRGMv2_1468_4_38
Type: TC
Location: 41345 - 42808 (+)
Type: TC
Location: 41345 - 42808 (+)
Gene ID: HRGMv2_1468_4_39
Type:
Location: 43272 - 43592 (+)
Type:
Location: 43272 - 43592 (+)
Gene ID: HRGMv2_1468_4_40
Type: TC
Location: 43714 - 46074 (+)
Type: TC
Location: 43714 - 46074 (+)
Gene ID: HRGMv2_1468_4_41
Type: TC
Location: 46199 - 47383 (+)
Type: TC
Location: 46199 - 47383 (+)
Gene ID: HRGMv2_1468_4_42
Type: CAZyme
Location: 47703 - 49079 (+)
Type: CAZyme
Location: 47703 - 49079 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019419505
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1468_4_38 | vegan > omnivore | 1.39109 | 0.00863 |