Cluster: HRGMv2_1468_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1468
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1468_25 | HRGMv2_1468_25_14 | 22772 | 24607 | + | GT2 |
| pfam | HRGMv2_1468_25 | HRGMv2_1468_25_15 | 24707 | 25894 | + | LicD |
| CAZyme | HRGMv2_1468_25 | HRGMv2_1468_25_16 | 25927 | 27768 | + | GT2 |
| CAZyme | HRGMv2_1468_25 | HRGMv2_1468_25_17 | 27800 | 28729 | - | GT81 |
| TC | HRGMv2_1468_25 | HRGMv2_1468_25_18 | 28891 | 29736 | + | 3.A.1.103.6 |
| TC | HRGMv2_1468_25 | HRGMv2_1468_25_19 | 29749 | 30516 | + | 3.A.1.103.1 |
Gene ID: HRGMv2_1468_25_14
Type: CAZyme
Location: 22772 - 24607 (+)
Type: CAZyme
Location: 22772 - 24607 (+)
Gene ID: HRGMv2_1468_25_15
Type: pfam
Location: 24707 - 25894 (+)
Type: pfam
Location: 24707 - 25894 (+)
Gene ID: HRGMv2_1468_25_16
Type: CAZyme
Location: 25927 - 27768 (+)
Type: CAZyme
Location: 25927 - 27768 (+)
Gene ID: HRGMv2_1468_25_17
Type: CAZyme
Location: 27800 - 28729 (-)
Type: CAZyme
Location: 27800 - 28729 (-)
Gene ID: HRGMv2_1468_25_18
Type: TC
Location: 28891 - 29736 (+)
Type: TC
Location: 28891 - 29736 (+)
Gene ID: HRGMv2_1468_25_19
Type: TC
Location: 29749 - 30516 (+)
Type: TC
Location: 29749 - 30516 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019419505
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1468_25_14 | vegan > omnivore | 10.23758 | 0.00863 |
| HRGMv2_1468_25_15 | vegan > omnivore | 17.60824 | 0.00863 |
| HRGMv2_1468_25_16 | vegan > omnivore | 17.40246 | 0.00863 |
| HRGMv2_1468_25_16 | vegetarian > omnivore | 12.91150 | 0.02921 |
| HRGMv2_1468_25_17 | vegan > omnivore | 1.67081 | 0.00863 |
| HRGMv2_1468_25_18 | vegan > omnivore | 2.33630 | 0.00863 |
| HRGMv2_1468_25_18 | vegetarian > omnivore | 1.00351 | 0.02921 |