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Cluster: HRGMv2_1468_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1468_20 HRGMv2_1468_20_98 112724 113893 - CE9
STP HRGMv2_1468_20 HRGMv2_1468_20_99 114012 115178 - SIS | SIS
TF HRGMv2_1468_20 HRGMv2_1468_20_100 115293 116024 - GntR
TC HRGMv2_1468_20 HRGMv2_1468_20_101 116210 117292 - 4.A.6.1.4
TC HRGMv2_1468_20 HRGMv2_1468_20_102 117282 118082 - 4.A.6.1.4
TC HRGMv2_1468_20 HRGMv2_1468_20_103 118173 118655 - 4.A.6.1.4
pfam HRGMv2_1468_20 HRGMv2_1468_20_104 118692 118973 - YajC
TC HRGMv2_1468_20 HRGMv2_1468_20_105 118973 119416 - 4.A.6.1.16
Gene ID: HRGMv2_1468_20_98
Type: CAZyme
Location: 112724 - 113893 (-)
Gene ID: HRGMv2_1468_20_99
Type: STP
Location: 114012 - 115178 (-)
Gene ID: HRGMv2_1468_20_100
Type: TF
Location: 115293 - 116024 (-)
Gene ID: HRGMv2_1468_20_101
Type: TC
Location: 116210 - 117292 (-)
Gene ID: HRGMv2_1468_20_102
Type: TC
Location: 117282 - 118082 (-)
Gene ID: HRGMv2_1468_20_103
Type: TC
Location: 118173 - 118655 (-)
Gene ID: HRGMv2_1468_20_104
Type: pfam
Location: 118692 - 118973 (-)
Gene ID: HRGMv2_1468_20_105
Type: TC
Location: 118973 - 119416 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1468_20_104 vegan > omnivore 1.01686 0.00863

🧭 Explore Read Mapping of CGC

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