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Cluster: HRGMv2_1467_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1467_42 HRGMv2_1467_42_3 2276 3742 - 2.A.66.2.23
pfam HRGMv2_1467_42 HRGMv2_1467_42_4 3827 4774 - ATPgrasp_TupA
pfam HRGMv2_1467_42 HRGMv2_1467_42_5 4918 6006 - EpsG
CAZyme HRGMv2_1467_42 HRGMv2_1467_42_6 6003 7106 - GT4
pfam HRGMv2_1467_42 HRGMv2_1467_42_7 7103 8050 - C5-epim_C
CAZyme HRGMv2_1467_42 HRGMv2_1467_42_8 8050 9342 - GT4
pfam HRGMv2_1467_42 HRGMv2_1467_42_9 9348 10619 - UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme HRGMv2_1467_42 HRGMv2_1467_42_10 10663 11580 - GT2
TC HRGMv2_1467_42 HRGMv2_1467_42_11 11584 12408 - 9.B.18.1.2
Gene ID: HRGMv2_1467_42_3
Type: TC
Location: 2276 - 3742 (-)
Gene ID: HRGMv2_1467_42_4
Type: pfam
Location: 3827 - 4774 (-)
Gene ID: HRGMv2_1467_42_5
Type: pfam
Location: 4918 - 6006 (-)
Gene ID: HRGMv2_1467_42_6
Type: CAZyme
Location: 6003 - 7106 (-)
Gene ID: HRGMv2_1467_42_7
Type: pfam
Location: 7103 - 8050 (-)
Gene ID: HRGMv2_1467_42_8
Type: CAZyme
Location: 8050 - 9342 (-)
Gene ID: HRGMv2_1467_42_9
Type: pfam
Location: 9348 - 10619 (-)
Gene ID: HRGMv2_1467_42_10
Type: CAZyme
Location: 10663 - 11580 (-)
Gene ID: HRGMv2_1467_42_11
Type: TC
Location: 11584 - 12408 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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