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Cluster: HRGMv2_1467_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1467_17 HRGMv2_1467_17_13 10174 11343 - CE9
STP HRGMv2_1467_17 HRGMv2_1467_17_14 11463 12629 - SIS | SIS
TF HRGMv2_1467_17 HRGMv2_1467_17_15 12744 13475 - GntR
TC HRGMv2_1467_17 HRGMv2_1467_17_16 13661 14743 - 4.A.6.1.4
TC HRGMv2_1467_17 HRGMv2_1467_17_17 14733 15533 - 4.A.6.1.4
TC HRGMv2_1467_17 HRGMv2_1467_17_18 15624 16106 - 4.A.6.1.4
pfam HRGMv2_1467_17 HRGMv2_1467_17_19 16143 16424 - YajC
TC HRGMv2_1467_17 HRGMv2_1467_17_20 16424 16867 - 4.A.6.1.16
Gene ID: HRGMv2_1467_17_13
Type: CAZyme
Location: 10174 - 11343 (-)
Gene ID: HRGMv2_1467_17_14
Type: STP
Location: 11463 - 12629 (-)
Gene ID: HRGMv2_1467_17_15
Type: TF
Location: 12744 - 13475 (-)
Gene ID: HRGMv2_1467_17_16
Type: TC
Location: 13661 - 14743 (-)
Gene ID: HRGMv2_1467_17_17
Type: TC
Location: 14733 - 15533 (-)
Gene ID: HRGMv2_1467_17_18
Type: TC
Location: 15624 - 16106 (-)
Gene ID: HRGMv2_1467_17_19
Type: pfam
Location: 16143 - 16424 (-)
Gene ID: HRGMv2_1467_17_20
Type: TC
Location: 16424 - 16867 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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