Cluster: HRGMv2_1464_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1464
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1464_5 | HRGMv2_1464_5_44 | 54754 | 55566 | + | 3.A.1.103.4 |
| TC | HRGMv2_1464_5 | HRGMv2_1464_5_45 | 55576 | 56331 | + | 3.A.1.103.1 |
| CAZyme | HRGMv2_1464_5 | HRGMv2_1464_5_46 | 56333 | 57589 | + | GT2 |
| CAZyme | HRGMv2_1464_5 | HRGMv2_1464_5_47 | 57629 | 58690 | + | GT2 |
| CAZyme | HRGMv2_1464_5 | HRGMv2_1464_5_48 | 58712 | 59947 | + | GT4 |
Gene ID: HRGMv2_1464_5_44
Type: TC
Location: 54754 - 55566 (+)
Type: TC
Location: 54754 - 55566 (+)
Gene ID: HRGMv2_1464_5_45
Type: TC
Location: 55576 - 56331 (+)
Type: TC
Location: 55576 - 56331 (+)
Gene ID: HRGMv2_1464_5_46
Type: CAZyme
Location: 56333 - 57589 (+)
Type: CAZyme
Location: 56333 - 57589 (+)
Gene ID: HRGMv2_1464_5_47
Type: CAZyme
Location: 57629 - 58690 (+)
Type: CAZyme
Location: 57629 - 58690 (+)
Gene ID: HRGMv2_1464_5_48
Type: CAZyme
Location: 58712 - 59947 (+)
Type: CAZyme
Location: 58712 - 59947 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019414445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1464_5_44 | vegetarian > vegan | 1.36502 | 0.04838 |
| HRGMv2_1464_5_45 | vegetarian > vegan | 1.14213 | 0.02717 |
| HRGMv2_1464_5_47 | vegetarian > omnivore | 2.35171 | 0.03201 |
| HRGMv2_1464_5_47 | vegetarian > vegan | 5.61979 | 0.02717 |
| HRGMv2_1464_5_48 | vegetarian > omnivore | 2.09638 | 0.03201 |
| HRGMv2_1464_5_48 | vegetarian > vegan | 3.77224 | 0.02717 |