Cluster: HRGMv2_1464_CGC7
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_1464
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1464_5 | HRGMv2_1464_5_29 | 30762 | 34160 | + | CBM13 | CBM13 | CBM13 | CBM13 | CBM13 |
| CAZyme | HRGMv2_1464_5 | HRGMv2_1464_5_30 | 34729 | 36087 | + | CBM13 | CBM13 |
| pfam | HRGMv2_1464_5 | HRGMv2_1464_5_31 | 36115 | 36669 | + | Peptidase_C39_2 |
| CAZyme | HRGMv2_1464_5 | HRGMv2_1464_5_32 | 37039 | 41031 | + | CBM13 | CBM13 | CBM13 | CBM13 | CBM13 | GH25 |
| CAZyme | HRGMv2_1464_5 | HRGMv2_1464_5_33 | 41155 | 42012 | + | CBM13 |
| CAZyme | HRGMv2_1464_5 | HRGMv2_1464_5_34 | 42200 | 43153 | - | GT81 |
| pfam | HRGMv2_1464_5 | HRGMv2_1464_5_35 | 43376 | 45205 | + | DUF6020 |
| TC | HRGMv2_1464_5 | HRGMv2_1464_5_36 | 45198 | 46229 | + | 9.B.97.6.2 |
| NULL(UNKNOWN) | HRGMv2_1464_5 | HRGMv2_1464_5_37 | 46248 | 48392 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1464_5 | HRGMv2_1464_5_38 | 48459 | 49478 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| CAZyme | HRGMv2_1464_5 | HRGMv2_1464_5_39 | 49744 | 50814 | + | GT2 |
| CAZyme | HRGMv2_1464_5 | HRGMv2_1464_5_40 | 50833 | 52053 | + | GT2 |
Gene ID: HRGMv2_1464_5_29
Type: CAZyme
Location: 30762 - 34160 (+)
Type: CAZyme
Location: 30762 - 34160 (+)
Gene ID: HRGMv2_1464_5_30
Type: CAZyme
Location: 34729 - 36087 (+)
Type: CAZyme
Location: 34729 - 36087 (+)
Gene ID: HRGMv2_1464_5_31
Type: pfam
Location: 36115 - 36669 (+)
Type: pfam
Location: 36115 - 36669 (+)
Gene ID: HRGMv2_1464_5_32
Type: CAZyme
Location: 37039 - 41031 (+)
Type: CAZyme
Location: 37039 - 41031 (+)
Gene ID: HRGMv2_1464_5_33
Type: CAZyme
Location: 41155 - 42012 (+)
Type: CAZyme
Location: 41155 - 42012 (+)
Gene ID: HRGMv2_1464_5_34
Type: CAZyme
Location: 42200 - 43153 (-)
Type: CAZyme
Location: 42200 - 43153 (-)
Gene ID: HRGMv2_1464_5_35
Type: pfam
Location: 43376 - 45205 (+)
Type: pfam
Location: 43376 - 45205 (+)
Gene ID: HRGMv2_1464_5_36
Type: TC
Location: 45198 - 46229 (+)
Type: TC
Location: 45198 - 46229 (+)
Gene ID: HRGMv2_1464_5_37
Type:
Location: 46248 - 48392 (+)
Type:
Location: 46248 - 48392 (+)
Gene ID: HRGMv2_1464_5_38
Type: pfam
Location: 48459 - 49478 (+)
Type: pfam
Location: 48459 - 49478 (+)
Gene ID: HRGMv2_1464_5_39
Type: CAZyme
Location: 49744 - 50814 (+)
Type: CAZyme
Location: 49744 - 50814 (+)
Gene ID: HRGMv2_1464_5_40
Type: CAZyme
Location: 50833 - 52053 (+)
Type: CAZyme
Location: 50833 - 52053 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019414445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.