Cluster: HRGMv2_1464_CGC5
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1464
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1464_3 | HRGMv2_1464_3_110 | 106887 | 108278 | - | 2.A.66.2.23 |
| NULL(UNKNOWN) | HRGMv2_1464_3 | HRGMv2_1464_3_111 | 108295 | 108882 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_1464_3 | HRGMv2_1464_3_112 | 108818 | 109720 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1464_3 | HRGMv2_1464_3_113 | 109728 | 110672 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_1464_3 | HRGMv2_1464_3_114 | 110680 | 110844 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_1464_3 | HRGMv2_1464_3_115 | 111189 | 112331 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1464_3 | HRGMv2_1464_3_116 | 112328 | 113224 | - | GT2 |
| CAZyme | HRGMv2_1464_3 | HRGMv2_1464_3_117 | 113224 | 113967 | - | GT32 |
| pfam | HRGMv2_1464_3 | HRGMv2_1464_3_118 | 113972 | 114457 | - | Glyco_tran_28_C |
| pfam | HRGMv2_1464_3 | HRGMv2_1464_3_119 | 114469 | 114876 | - | Alg14 |
| TC | HRGMv2_1464_3 | HRGMv2_1464_3_120 | 114937 | 115686 | - | 9.B.18.1.2 |
Gene ID: HRGMv2_1464_3_110
Type: TC
Location: 106887 - 108278 (-)
Type: TC
Location: 106887 - 108278 (-)
Gene ID: HRGMv2_1464_3_111
Type:
Location: 108295 - 108882 (+)
Type:
Location: 108295 - 108882 (+)
Gene ID: HRGMv2_1464_3_112
Type:
Location: 108818 - 109720 (-)
Type:
Location: 108818 - 109720 (-)
Gene ID: HRGMv2_1464_3_113
Type: CAZyme
Location: 109728 - 110672 (-)
Type: CAZyme
Location: 109728 - 110672 (-)
Gene ID: HRGMv2_1464_3_114
Type:
Location: 110680 - 110844 (-)
Type:
Location: 110680 - 110844 (-)
Gene ID: HRGMv2_1464_3_115
Type:
Location: 111189 - 112331 (-)
Type:
Location: 111189 - 112331 (-)
Gene ID: HRGMv2_1464_3_116
Type: CAZyme
Location: 112328 - 113224 (-)
Type: CAZyme
Location: 112328 - 113224 (-)
Gene ID: HRGMv2_1464_3_117
Type: CAZyme
Location: 113224 - 113967 (-)
Type: CAZyme
Location: 113224 - 113967 (-)
Gene ID: HRGMv2_1464_3_118
Type: pfam
Location: 113972 - 114457 (-)
Type: pfam
Location: 113972 - 114457 (-)
Gene ID: HRGMv2_1464_3_119
Type: pfam
Location: 114469 - 114876 (-)
Type: pfam
Location: 114469 - 114876 (-)
Gene ID: HRGMv2_1464_3_120
Type: TC
Location: 114937 - 115686 (-)
Type: TC
Location: 114937 - 115686 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019414445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.