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Cluster: HRGMv2_1464_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1464_10 HRGMv2_1464_10_77 85504 86904 + GH1
TC HRGMv2_1464_10 HRGMv2_1464_10_78 87025 88368 + 4.A.3.2.9
TC HRGMv2_1464_10 HRGMv2_1464_10_79 88530 88832 + 4.A.3.2.9
TC HRGMv2_1464_10 HRGMv2_1464_10_80 88842 89174 + 4.A.3.2.3
STP HRGMv2_1464_10 HRGMv2_1464_10_81 89416 90369 + Glucokinase
pfam HRGMv2_1464_10 HRGMv2_1464_10_82 90517 91440 + DHH | DHHA2
TC HRGMv2_1464_10 HRGMv2_1464_10_83 91708 93066 + 2.A.33.1.1
Gene ID: HRGMv2_1464_10_77
Type: CAZyme
Location: 85504 - 86904 (+)
Gene ID: HRGMv2_1464_10_78
Type: TC
Location: 87025 - 88368 (+)
Gene ID: HRGMv2_1464_10_79
Type: TC
Location: 88530 - 88832 (+)
Gene ID: HRGMv2_1464_10_80
Type: TC
Location: 88842 - 89174 (+)
Gene ID: HRGMv2_1464_10_81
Type: STP
Location: 89416 - 90369 (+)
Gene ID: HRGMv2_1464_10_82
Type: pfam
Location: 90517 - 91440 (+)
Gene ID: HRGMv2_1464_10_83
Type: TC
Location: 91708 - 93066 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1464_10_79 vegan > omnivore 1.02327 0.00566

🧭 Explore Read Mapping of CGC

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