dbCAN Logo

Cluster: HRGMv2_1463_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1463_1 HRGMv2_1463_1_16 16815 17984 - CE9
STP HRGMv2_1463_1 HRGMv2_1463_1_17 18103 19269 - SIS | SIS
TF HRGMv2_1463_1 HRGMv2_1463_1_18 19384 20115 - GntR
TC HRGMv2_1463_1 HRGMv2_1463_1_19 20300 21382 - 4.A.6.1.4
TC HRGMv2_1463_1 HRGMv2_1463_1_20 21372 22172 - 4.A.6.1.4
TC HRGMv2_1463_1 HRGMv2_1463_1_21 22263 22745 - 4.A.6.1.4
pfam HRGMv2_1463_1 HRGMv2_1463_1_22 22782 23063 - YajC
TC HRGMv2_1463_1 HRGMv2_1463_1_23 23063 23506 - 4.A.6.1.16
Gene ID: HRGMv2_1463_1_16
Type: CAZyme
Location: 16815 - 17984 (-)
Gene ID: HRGMv2_1463_1_17
Type: STP
Location: 18103 - 19269 (-)
Gene ID: HRGMv2_1463_1_18
Type: TF
Location: 19384 - 20115 (-)
Gene ID: HRGMv2_1463_1_19
Type: TC
Location: 20300 - 21382 (-)
Gene ID: HRGMv2_1463_1_20
Type: TC
Location: 21372 - 22172 (-)
Gene ID: HRGMv2_1463_1_21
Type: TC
Location: 22263 - 22745 (-)
Gene ID: HRGMv2_1463_1_22
Type: pfam
Location: 22782 - 23063 (-)
Gene ID: HRGMv2_1463_1_23
Type: TC
Location: 23063 - 23506 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1463_1_22 vegan > omnivore 1.00109 0.00863

🧭 Explore Read Mapping of CGC

← Back to Cluster List