Cluster: HRGMv2_1462_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_1462
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1462_21 | HRGMv2_1462_21_35 | 43862 | 44926 | - | GT2 |
| CAZyme | HRGMv2_1462_21 | HRGMv2_1462_21_36 | 44923 | 45960 | - | GT4 |
| CAZyme | HRGMv2_1462_21 | HRGMv2_1462_21_37 | 45960 | 46712 | - | GT32 |
| STP | HRGMv2_1462_21 | HRGMv2_1462_21_38 | 46735 | 47979 | - | Fer4 |
| pfam | HRGMv2_1462_21 | HRGMv2_1462_21_39 | 47988 | 49175 | - | PS_pyruv_trans |
| CAZyme | HRGMv2_1462_21 | HRGMv2_1462_21_40 | 49185 | 50288 | - | GT4 |
| TC | HRGMv2_1462_21 | HRGMv2_1462_21_41 | 50289 | 51044 | - | 9.B.18.1.2 |
Gene ID: HRGMv2_1462_21_35
Type: CAZyme
Location: 43862 - 44926 (-)
Type: CAZyme
Location: 43862 - 44926 (-)
Gene ID: HRGMv2_1462_21_36
Type: CAZyme
Location: 44923 - 45960 (-)
Type: CAZyme
Location: 44923 - 45960 (-)
Gene ID: HRGMv2_1462_21_37
Type: CAZyme
Location: 45960 - 46712 (-)
Type: CAZyme
Location: 45960 - 46712 (-)
Gene ID: HRGMv2_1462_21_38
Type: STP
Location: 46735 - 47979 (-)
Type: STP
Location: 46735 - 47979 (-)
Gene ID: HRGMv2_1462_21_39
Type: pfam
Location: 47988 - 49175 (-)
Type: pfam
Location: 47988 - 49175 (-)
Gene ID: HRGMv2_1462_21_40
Type: CAZyme
Location: 49185 - 50288 (-)
Type: CAZyme
Location: 49185 - 50288 (-)
Gene ID: HRGMv2_1462_21_41
Type: TC
Location: 50289 - 51044 (-)
Type: TC
Location: 50289 - 51044 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019419525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1462_21_41 | vegan > omnivore | 1.01553 | 0.01332 |