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Cluster: HRGMv2_1462_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1462_6 HRGMv2_1462_6_6 3557 4726 - CE9
STP HRGMv2_1462_6 HRGMv2_1462_6_7 4844 6010 - SIS | SIS
TF HRGMv2_1462_6 HRGMv2_1462_6_8 6125 6856 - GntR
TC HRGMv2_1462_6 HRGMv2_1462_6_9 7042 8124 - 4.A.6.1.4
TC HRGMv2_1462_6 HRGMv2_1462_6_10 8114 8914 - 4.A.6.1.4
TC HRGMv2_1462_6 HRGMv2_1462_6_11 9005 9487 - 4.A.6.1.4
pfam HRGMv2_1462_6 HRGMv2_1462_6_12 9524 9805 - YajC
TC HRGMv2_1462_6 HRGMv2_1462_6_13 9805 10248 - 4.A.6.1.16
Gene ID: HRGMv2_1462_6_6
Type: CAZyme
Location: 3557 - 4726 (-)
Gene ID: HRGMv2_1462_6_7
Type: STP
Location: 4844 - 6010 (-)
Gene ID: HRGMv2_1462_6_8
Type: TF
Location: 6125 - 6856 (-)
Gene ID: HRGMv2_1462_6_9
Type: TC
Location: 7042 - 8124 (-)
Gene ID: HRGMv2_1462_6_10
Type: TC
Location: 8114 - 8914 (-)
Gene ID: HRGMv2_1462_6_11
Type: TC
Location: 9005 - 9487 (-)
Gene ID: HRGMv2_1462_6_12
Type: pfam
Location: 9524 - 9805 (-)
Gene ID: HRGMv2_1462_6_13
Type: TC
Location: 9805 - 10248 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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