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Cluster: HRGMv2_1462_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1462_3 HRGMv2_1462_3_6 5000 5338 - 4.A.3.1.2
TF HRGMv2_1462_3 HRGMv2_1462_3_7 5553 6557 - LacI
TC HRGMv2_1462_3 HRGMv2_1462_3_8 6915 8690 + 4.A.3.1.1
CAZyme HRGMv2_1462_3 HRGMv2_1462_3_9 8757 10196 + GH1
TF HRGMv2_1462_3 HRGMv2_1462_3_10 10458 11495 - LacI
CAZyme HRGMv2_1462_3 HRGMv2_1462_3_11 11837 13279 + GH1
TC HRGMv2_1462_3 HRGMv2_1462_3_12 13456 15216 + 4.A.3.1.1
TF HRGMv2_1462_3 HRGMv2_1462_3_13 15470 16480 - LacI
TC HRGMv2_1462_3 HRGMv2_1462_3_14 17100 18533 + 4.A.3.1.1
CAZyme HRGMv2_1462_3 HRGMv2_1462_3_15 18609 20030 + GH1
Gene ID: HRGMv2_1462_3_6
Type: TC
Location: 5000 - 5338 (-)
Gene ID: HRGMv2_1462_3_7
Type: TF
Location: 5553 - 6557 (-)
Gene ID: HRGMv2_1462_3_8
Type: TC
Location: 6915 - 8690 (+)
Gene ID: HRGMv2_1462_3_9
Type: CAZyme
Location: 8757 - 10196 (+)
Gene ID: HRGMv2_1462_3_10
Type: TF
Location: 10458 - 11495 (-)
Gene ID: HRGMv2_1462_3_11
Type: CAZyme
Location: 11837 - 13279 (+)
Gene ID: HRGMv2_1462_3_12
Type: TC
Location: 13456 - 15216 (+)
Gene ID: HRGMv2_1462_3_13
Type: TF
Location: 15470 - 16480 (-)
Gene ID: HRGMv2_1462_3_14
Type: TC
Location: 17100 - 18533 (+)
Gene ID: HRGMv2_1462_3_15
Type: CAZyme
Location: 18609 - 20030 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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