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Cluster: HRGMv2_1462_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1462_1 HRGMv2_1462_1_28 35279 36274 + GT2
CAZyme HRGMv2_1462_1 HRGMv2_1462_1_29 36342 37484 - GT4
CAZyme HRGMv2_1462_1 HRGMv2_1462_1_30 37501 38478 - GT2
CAZyme HRGMv2_1462_1 HRGMv2_1462_1_31 39559 40251 + GT2
pfam HRGMv2_1462_1 HRGMv2_1462_1_32 40257 40580 + DUF2304
pfam HRGMv2_1462_1 HRGMv2_1462_1_33 42113 43930 - DUF6541
CAZyme HRGMv2_1462_1 HRGMv2_1462_1_34 44157 46028 - GT2
CAZyme HRGMv2_1462_1 HRGMv2_1462_1_35 46198 48042 + GT2
CAZyme HRGMv2_1462_1 HRGMv2_1462_1_36 48074 49003 - GT81
TC HRGMv2_1462_1 HRGMv2_1462_1_37 49165 50010 + 3.A.1.103.6
TC HRGMv2_1462_1 HRGMv2_1462_1_38 50023 50790 + 3.A.1.103.1
Gene ID: HRGMv2_1462_1_28
Type: CAZyme
Location: 35279 - 36274 (+)
Gene ID: HRGMv2_1462_1_29
Type: CAZyme
Location: 36342 - 37484 (-)
Gene ID: HRGMv2_1462_1_30
Type: CAZyme
Location: 37501 - 38478 (-)
Gene ID: HRGMv2_1462_1_31
Type: CAZyme
Location: 39559 - 40251 (+)
Gene ID: HRGMv2_1462_1_32
Type: pfam
Location: 40257 - 40580 (+)
Gene ID: HRGMv2_1462_1_33
Type: pfam
Location: 42113 - 43930 (-)
Gene ID: HRGMv2_1462_1_34
Type: CAZyme
Location: 44157 - 46028 (-)
Gene ID: HRGMv2_1462_1_35
Type: CAZyme
Location: 46198 - 48042 (+)
Gene ID: HRGMv2_1462_1_36
Type: CAZyme
Location: 48074 - 49003 (-)
Gene ID: HRGMv2_1462_1_37
Type: TC
Location: 49165 - 50010 (+)
Gene ID: HRGMv2_1462_1_38
Type: TC
Location: 50023 - 50790 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1462_1_35 vegan > omnivore 16.86752 0.01332
HRGMv2_1462_1_36 vegan > omnivore 1.55621 0.01332
HRGMv2_1462_1_37 vegan > omnivore 1.60624 0.01332

🧭 Explore Read Mapping of CGC

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