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Cluster: HRGMv2_1461_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1461_36 HRGMv2_1461_36_68 71690 73066 - GH13_20
TC HRGMv2_1461_36 HRGMv2_1461_36_69 73220 74416 - 2.A.1.2.18
TC HRGMv2_1461_36 HRGMv2_1461_36_70 74537 76897 - 9.A.8.1.6
peptidase HRGMv2_1461_36 HRGMv2_1461_36_71 77369 78268 - S09.UPW
TC HRGMv2_1461_36 HRGMv2_1461_36_72 78512 79075 + 4.A.1.2.6
pfam HRGMv2_1461_36 HRGMv2_1461_36_73 79257 80660 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_1461_36 HRGMv2_1461_36_74 80919 81704 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1461_36 HRGMv2_1461_36_75 81865 82845 + 3.A.1.34.1
TC HRGMv2_1461_36 HRGMv2_1461_36_76 83049 83972 + 3.A.1.34.1
TC HRGMv2_1461_36 HRGMv2_1461_36_77 83965 84759 + 3.A.1.34.1
Gene ID: HRGMv2_1461_36_68
Type: CAZyme
Location: 71690 - 73066 (-)
Gene ID: HRGMv2_1461_36_69
Type: TC
Location: 73220 - 74416 (-)
Gene ID: HRGMv2_1461_36_70
Type: TC
Location: 74537 - 76897 (-)
Gene ID: HRGMv2_1461_36_71
Type: peptidase
Location: 77369 - 78268 (-)
Gene ID: HRGMv2_1461_36_72
Type: TC
Location: 78512 - 79075 (+)
Gene ID: HRGMv2_1461_36_73
Type: pfam
Location: 79257 - 80660 (+)
Gene ID: HRGMv2_1461_36_74
Type:
Location: 80919 - 81704 (+)
Gene ID: HRGMv2_1461_36_75
Type: TC
Location: 81865 - 82845 (+)
Gene ID: HRGMv2_1461_36_76
Type: TC
Location: 83049 - 83972 (+)
Gene ID: HRGMv2_1461_36_77
Type: TC
Location: 83965 - 84759 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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