Cluster: HRGMv2_1461_CGC12
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate: host glycan
- Genome ID: HRGMv2_1461
- CGC Family ID: CGCFAM_00014
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1461_23 | HRGMv2_1461_23_26 | 25312 | 27006 | + | 4.A.3.1.1 |
| STP | HRGMv2_1461_23 | HRGMv2_1461_23_27 | 27169 | 27510 | + | DeoRC |
| pfam | HRGMv2_1461_23 | HRGMv2_1461_23_28 | 27548 | 28780 | - | Fic |
| CAZyme | HRGMv2_1461_23 | HRGMv2_1461_23_29 | 29148 | 30569 | - | GH1 |
| TC | HRGMv2_1461_23 | HRGMv2_1461_23_30 | 30646 | 32424 | - | 4.A.3.1.1 |
| TF | HRGMv2_1461_23 | HRGMv2_1461_23_31 | 32699 | 33709 | + | LacI |
| TC | HRGMv2_1461_23 | HRGMv2_1461_23_32 | 33963 | 35723 | - | 4.A.3.1.1 |
| CAZyme | HRGMv2_1461_23 | HRGMv2_1461_23_33 | 35900 | 37342 | - | GH1 |
| TF | HRGMv2_1461_23 | HRGMv2_1461_23_34 | 37684 | 38721 | + | LacI |
| CAZyme | HRGMv2_1461_23 | HRGMv2_1461_23_35 | 38998 | 40437 | - | GH1 |
| TC | HRGMv2_1461_23 | HRGMv2_1461_23_36 | 40504 | 41628 | - | 4.A.3.1.1 |
| TC | HRGMv2_1461_23 | HRGMv2_1461_23_37 | 41577 | 42269 | - | 4.A.3.1.1 |
| TF | HRGMv2_1461_23 | HRGMv2_1461_23_38 | 42627 | 43631 | + | LacI |
| TC | HRGMv2_1461_23 | HRGMv2_1461_23_39 | 43846 | 44184 | + | 4.A.3.1.2 |
Gene ID: HRGMv2_1461_23_26
Type: TC
Location: 25312 - 27006 (+)
Type: TC
Location: 25312 - 27006 (+)
Gene ID: HRGMv2_1461_23_27
Type: STP
Location: 27169 - 27510 (+)
Type: STP
Location: 27169 - 27510 (+)
Gene ID: HRGMv2_1461_23_28
Type: pfam
Location: 27548 - 28780 (-)
Type: pfam
Location: 27548 - 28780 (-)
Gene ID: HRGMv2_1461_23_29
Type: CAZyme
Location: 29148 - 30569 (-)
Type: CAZyme
Location: 29148 - 30569 (-)
Gene ID: HRGMv2_1461_23_30
Type: TC
Location: 30646 - 32424 (-)
Type: TC
Location: 30646 - 32424 (-)
Gene ID: HRGMv2_1461_23_31
Type: TF
Location: 32699 - 33709 (+)
Type: TF
Location: 32699 - 33709 (+)
Gene ID: HRGMv2_1461_23_32
Type: TC
Location: 33963 - 35723 (-)
Type: TC
Location: 33963 - 35723 (-)
Gene ID: HRGMv2_1461_23_33
Type: CAZyme
Location: 35900 - 37342 (-)
Type: CAZyme
Location: 35900 - 37342 (-)
Gene ID: HRGMv2_1461_23_34
Type: TF
Location: 37684 - 38721 (+)
Type: TF
Location: 37684 - 38721 (+)
Gene ID: HRGMv2_1461_23_35
Type: CAZyme
Location: 38998 - 40437 (-)
Type: CAZyme
Location: 38998 - 40437 (-)
Gene ID: HRGMv2_1461_23_36
Type: TC
Location: 40504 - 41628 (-)
Type: TC
Location: 40504 - 41628 (-)
Gene ID: HRGMv2_1461_23_37
Type: TC
Location: 41577 - 42269 (-)
Type: TC
Location: 41577 - 42269 (-)
Gene ID: HRGMv2_1461_23_38
Type: TF
Location: 42627 - 43631 (+)
Type: TF
Location: 42627 - 43631 (+)
Gene ID: HRGMv2_1461_23_39
Type: TC
Location: 43846 - 44184 (+)
Type: TC
Location: 43846 - 44184 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019414515
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.