dbCAN Logo

Cluster: HRGMv2_1461_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1461_23 HRGMv2_1461_23_9 8922 9365 + 4.A.6.1.16
pfam HRGMv2_1461_23 HRGMv2_1461_23_10 9365 9646 + YajC
TC HRGMv2_1461_23 HRGMv2_1461_23_11 9683 10165 + 4.A.6.1.4
TC HRGMv2_1461_23 HRGMv2_1461_23_12 10256 11056 + 4.A.6.1.4
TC HRGMv2_1461_23 HRGMv2_1461_23_13 11046 12128 + 4.A.6.1.4
TF HRGMv2_1461_23 HRGMv2_1461_23_14 12313 13044 + GntR
STP HRGMv2_1461_23 HRGMv2_1461_23_15 13159 14325 + SIS | SIS
CAZyme HRGMv2_1461_23 HRGMv2_1461_23_16 14443 15612 + CE9
Gene ID: HRGMv2_1461_23_9
Type: TC
Location: 8922 - 9365 (+)
Gene ID: HRGMv2_1461_23_10
Type: pfam
Location: 9365 - 9646 (+)
Gene ID: HRGMv2_1461_23_11
Type: TC
Location: 9683 - 10165 (+)
Gene ID: HRGMv2_1461_23_12
Type: TC
Location: 10256 - 11056 (+)
Gene ID: HRGMv2_1461_23_13
Type: TC
Location: 11046 - 12128 (+)
Gene ID: HRGMv2_1461_23_14
Type: TF
Location: 12313 - 13044 (+)
Gene ID: HRGMv2_1461_23_15
Type: STP
Location: 13159 - 14325 (+)
Gene ID: HRGMv2_1461_23_16
Type: CAZyme
Location: 14443 - 15612 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1461_23_10 vegan > omnivore 1.00792 0.01287

🧭 Explore Read Mapping of CGC

← Back to Cluster List