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Cluster: HRGMv2_1460_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1460_50 HRGMv2_1460_50_18 14805 16040 - 2.A.66.2.10
TC HRGMv2_1460_50 HRGMv2_1460_50_19 16421 17542 - 9.B.183.1.8
CAZyme HRGMv2_1460_50 HRGMv2_1460_50_20 17554 18630 - GT4
pfam HRGMv2_1460_50 HRGMv2_1460_50_21 18630 19814 - Epimerase_2
pfam HRGMv2_1460_50 HRGMv2_1460_50_22 19819 21036 - Epimerase | Polysacc_synt_C
TC HRGMv2_1460_50 HRGMv2_1460_50_23 21038 22096 - 9.B.18.2.1
CAZyme HRGMv2_1460_50 HRGMv2_1460_50_24 22097 22873 - GT26
TC HRGMv2_1460_50 HRGMv2_1460_50_25 22873 23586 - 9.B.18.1.2
Gene ID: HRGMv2_1460_50_18
Type: TC
Location: 14805 - 16040 (-)
Gene ID: HRGMv2_1460_50_19
Type: TC
Location: 16421 - 17542 (-)
Gene ID: HRGMv2_1460_50_20
Type: CAZyme
Location: 17554 - 18630 (-)
Gene ID: HRGMv2_1460_50_21
Type: pfam
Location: 18630 - 19814 (-)
Gene ID: HRGMv2_1460_50_22
Type: pfam
Location: 19819 - 21036 (-)
Gene ID: HRGMv2_1460_50_23
Type: TC
Location: 21038 - 22096 (-)
Gene ID: HRGMv2_1460_50_24
Type: CAZyme
Location: 22097 - 22873 (-)
Gene ID: HRGMv2_1460_50_25
Type: TC
Location: 22873 - 23586 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1460_50_22 vegetarian > omnivore 1.49261 0.02892
HRGMv2_1460_50_22 vegetarian > vegan 1.89319 0.00313

🧭 Explore Read Mapping of CGC

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