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Cluster: HRGMv2_1460_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1460_13 HRGMv2_1460_13_3 1566 1904 - 4.A.3.1.2
TF HRGMv2_1460_13 HRGMv2_1460_13_4 2119 3123 - LacI
TC HRGMv2_1460_13 HRGMv2_1460_13_5 3481 5247 + 4.A.3.1.1
CAZyme HRGMv2_1460_13 HRGMv2_1460_13_6 5314 6753 + GH1
TF HRGMv2_1460_13 HRGMv2_1460_13_7 7030 8067 - LacI
CAZyme HRGMv2_1460_13 HRGMv2_1460_13_8 8409 9851 + GH1
TC HRGMv2_1460_13 HRGMv2_1460_13_9 10028 11788 + 4.A.3.1.1
TF HRGMv2_1460_13 HRGMv2_1460_13_10 12202 13212 - LacI
TC HRGMv2_1460_13 HRGMv2_1460_13_11 13488 15266 + 4.A.3.1.1
CAZyme HRGMv2_1460_13 HRGMv2_1460_13_12 15343 16764 + GH1
pfam HRGMv2_1460_13 HRGMv2_1460_13_13 17133 18365 + Fic
STP HRGMv2_1460_13 HRGMv2_1460_13_14 18362 18742 - DeoRC
TC HRGMv2_1460_13 HRGMv2_1460_13_15 18905 20599 - 4.A.3.1.1
Gene ID: HRGMv2_1460_13_3
Type: TC
Location: 1566 - 1904 (-)
Gene ID: HRGMv2_1460_13_4
Type: TF
Location: 2119 - 3123 (-)
Gene ID: HRGMv2_1460_13_5
Type: TC
Location: 3481 - 5247 (+)
Gene ID: HRGMv2_1460_13_6
Type: CAZyme
Location: 5314 - 6753 (+)
Gene ID: HRGMv2_1460_13_7
Type: TF
Location: 7030 - 8067 (-)
Gene ID: HRGMv2_1460_13_8
Type: CAZyme
Location: 8409 - 9851 (+)
Gene ID: HRGMv2_1460_13_9
Type: TC
Location: 10028 - 11788 (+)
Gene ID: HRGMv2_1460_13_10
Type: TF
Location: 12202 - 13212 (-)
Gene ID: HRGMv2_1460_13_11
Type: TC
Location: 13488 - 15266 (+)
Gene ID: HRGMv2_1460_13_12
Type: CAZyme
Location: 15343 - 16764 (+)
Gene ID: HRGMv2_1460_13_13
Type: pfam
Location: 17133 - 18365 (+)
Gene ID: HRGMv2_1460_13_14
Type: STP
Location: 18362 - 18742 (-)
Gene ID: HRGMv2_1460_13_15
Type: TC
Location: 18905 - 20599 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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