Cluster: HRGMv2_1460_CGC19
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1460
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1460_45 | HRGMv2_1460_45_104 | 119418 | 120896 | + | GH1 |
| TC | HRGMv2_1460_45 | HRGMv2_1460_45_105 | 120908 | 122278 | + | 4.A.1.2.11 |
| pfam | HRGMv2_1460_45 | HRGMv2_1460_45_106 | 122405 | 124540 | - | Radical_SAM_N | DUF3362 |
| TC | HRGMv2_1460_45 | HRGMv2_1460_45_107 | 124794 | 125510 | + | 9.B.143.2.3 |
Gene ID: HRGMv2_1460_45_104
Type: CAZyme
Location: 119418 - 120896 (+)
Type: CAZyme
Location: 119418 - 120896 (+)
Gene ID: HRGMv2_1460_45_105
Type: TC
Location: 120908 - 122278 (+)
Type: TC
Location: 120908 - 122278 (+)
Gene ID: HRGMv2_1460_45_106
Type: pfam
Location: 122405 - 124540 (-)
Type: pfam
Location: 122405 - 124540 (-)
Gene ID: HRGMv2_1460_45_107
Type: TC
Location: 124794 - 125510 (+)
Type: TC
Location: 124794 - 125510 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019413925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1460_45_104 | vegan > omnivore | 1.09047 | 0.01560 |
| HRGMv2_1460_45_105 | vegan > omnivore | 1.03242 | 0.01560 |