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Cluster: HRGMv2_1460_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1460_33 HRGMv2_1460_33_13 12178 13347 - CE9
STP HRGMv2_1460_33 HRGMv2_1460_33_14 13467 14633 - SIS | SIS
TF HRGMv2_1460_33 HRGMv2_1460_33_15 14748 15479 - GntR
TC HRGMv2_1460_33 HRGMv2_1460_33_16 15665 16747 - 4.A.6.1.4
TC HRGMv2_1460_33 HRGMv2_1460_33_17 16737 17537 - 4.A.6.1.4
TC HRGMv2_1460_33 HRGMv2_1460_33_18 17628 18110 - 4.A.6.1.4
pfam HRGMv2_1460_33 HRGMv2_1460_33_19 18147 18428 - YajC
TC HRGMv2_1460_33 HRGMv2_1460_33_20 18428 18871 - 4.A.6.1.16
Gene ID: HRGMv2_1460_33_13
Type: CAZyme
Location: 12178 - 13347 (-)
Gene ID: HRGMv2_1460_33_14
Type: STP
Location: 13467 - 14633 (-)
Gene ID: HRGMv2_1460_33_15
Type: TF
Location: 14748 - 15479 (-)
Gene ID: HRGMv2_1460_33_16
Type: TC
Location: 15665 - 16747 (-)
Gene ID: HRGMv2_1460_33_17
Type: TC
Location: 16737 - 17537 (-)
Gene ID: HRGMv2_1460_33_18
Type: TC
Location: 17628 - 18110 (-)
Gene ID: HRGMv2_1460_33_19
Type: pfam
Location: 18147 - 18428 (-)
Gene ID: HRGMv2_1460_33_20
Type: TC
Location: 18428 - 18871 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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