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Cluster: HRGMv2_1460_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1460_27 HRGMv2_1460_27_46 42632 44008 - GH13_20
TC HRGMv2_1460_27 HRGMv2_1460_27_47 44191 45387 - 2.A.1.2.18
NULL(UNKNOWN) HRGMv2_1460_27 HRGMv2_1460_27_48 45562 46314 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1460_27 HRGMv2_1460_27_49 46480 47853 - GH4
TF HRGMv2_1460_27 HRGMv2_1460_27_50 48029 48781 + HTH_6
TC HRGMv2_1460_27 HRGMv2_1460_27_51 48844 50508 - 4.A.1.1.3
TC HRGMv2_1460_27 HRGMv2_1460_27_52 50823 53183 - 9.A.8.1.6
TC HRGMv2_1460_27 HRGMv2_1460_27_53 53503 54966 - 2.A.3.2.3
Gene ID: HRGMv2_1460_27_46
Type: CAZyme
Location: 42632 - 44008 (-)
Gene ID: HRGMv2_1460_27_47
Type: TC
Location: 44191 - 45387 (-)
Gene ID: HRGMv2_1460_27_48
Type:
Location: 45562 - 46314 (-)
Gene ID: HRGMv2_1460_27_49
Type: CAZyme
Location: 46480 - 47853 (-)
Gene ID: HRGMv2_1460_27_50
Type: TF
Location: 48029 - 48781 (+)
Gene ID: HRGMv2_1460_27_51
Type: TC
Location: 48844 - 50508 (-)
Gene ID: HRGMv2_1460_27_52
Type: TC
Location: 50823 - 53183 (-)
Gene ID: HRGMv2_1460_27_53
Type: TC
Location: 53503 - 54966 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1460_27_48 vegan > omnivore 1.58986 0.01560
HRGMv2_1460_27_49 vegan > omnivore 1.35944 0.01560
HRGMv2_1460_27_53 vegan > omnivore 1.52428 0.01560

🧭 Explore Read Mapping of CGC

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