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Cluster: HRGMv2_1459_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1459_17 HRGMv2_1459_17_3 2839 5289 - 4.A.1.1.8
TF HRGMv2_1459_17 HRGMv2_1459_17_4 5518 6237 + GntR
TC HRGMv2_1459_17 HRGMv2_1459_17_5 6544 7860 + 3.A.1.1.45
TC HRGMv2_1459_17 HRGMv2_1459_17_6 7948 8802 + 3.A.1.1.45
TC HRGMv2_1459_17 HRGMv2_1459_17_7 8802 9641 + 3.A.1.1.45
TC HRGMv2_1459_17 HRGMv2_1459_17_8 9710 10909 + 3.A.1.1.22
CAZyme HRGMv2_1459_17 HRGMv2_1459_17_9 11445 13712 - GT35
CAZyme HRGMv2_1459_17 HRGMv2_1459_17_10 13841 15346 - GH77
Gene ID: HRGMv2_1459_17_3
Type: TC
Location: 2839 - 5289 (-)
Gene ID: HRGMv2_1459_17_4
Type: TF
Location: 5518 - 6237 (+)
Gene ID: HRGMv2_1459_17_5
Type: TC
Location: 6544 - 7860 (+)
Gene ID: HRGMv2_1459_17_6
Type: TC
Location: 7948 - 8802 (+)
Gene ID: HRGMv2_1459_17_7
Type: TC
Location: 8802 - 9641 (+)
Gene ID: HRGMv2_1459_17_8
Type: TC
Location: 9710 - 10909 (+)
Gene ID: HRGMv2_1459_17_9
Type: CAZyme
Location: 11445 - 13712 (-)
Gene ID: HRGMv2_1459_17_10
Type: CAZyme
Location: 13841 - 15346 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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