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Cluster: HRGMv2_1459_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1459_23 HRGMv2_1459_23_4 3381 4706 + GH4
TC HRGMv2_1459_23 HRGMv2_1459_23_5 4789 6351 + 4.A.1.1.3
TF HRGMv2_1459_23 HRGMv2_1459_23_6 6545 7345 - HTH_6
TC HRGMv2_1459_23 HRGMv2_1459_23_7 7423 9003 - 4.A.1.1.14
CAZyme HRGMv2_1459_23 HRGMv2_1459_23_8 9028 10353 - GH4
TC HRGMv2_1459_23 HRGMv2_1459_23_9 10597 11850 - 2.A.1.2.25
NULL(UNKNOWN) HRGMv2_1459_23 HRGMv2_1459_23_10 12089 12958 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1459_23 HRGMv2_1459_23_11 13038 13931 + Aldose_epim
TC HRGMv2_1459_23 HRGMv2_1459_23_12 14195 15121 + 3.A.1.3.20
TC HRGMv2_1459_23 HRGMv2_1459_23_13 15131 16279 + 3.A.1.3.20
TC HRGMv2_1459_23 HRGMv2_1459_23_14 16302 16982 + 3.A.1.3.20
Gene ID: HRGMv2_1459_23_4
Type: CAZyme
Location: 3381 - 4706 (+)
Gene ID: HRGMv2_1459_23_5
Type: TC
Location: 4789 - 6351 (+)
Gene ID: HRGMv2_1459_23_6
Type: TF
Location: 6545 - 7345 (-)
Gene ID: HRGMv2_1459_23_7
Type: TC
Location: 7423 - 9003 (-)
Gene ID: HRGMv2_1459_23_8
Type: CAZyme
Location: 9028 - 10353 (-)
Gene ID: HRGMv2_1459_23_9
Type: TC
Location: 10597 - 11850 (-)
Gene ID: HRGMv2_1459_23_10
Type:
Location: 12089 - 12958 (+)
Gene ID: HRGMv2_1459_23_11
Type: pfam
Location: 13038 - 13931 (+)
Gene ID: HRGMv2_1459_23_12
Type: TC
Location: 14195 - 15121 (+)
Gene ID: HRGMv2_1459_23_13
Type: TC
Location: 15131 - 16279 (+)
Gene ID: HRGMv2_1459_23_14
Type: TC
Location: 16302 - 16982 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1459_23_14 vegetarian > vegan 1.17554 0.00290

🧭 Explore Read Mapping of CGC

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