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Cluster: HRGMv2_1458_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1458_25 HRGMv2_1458_25_7 7742 9142 + GH1
TC HRGMv2_1458_25 HRGMv2_1458_25_8 9263 10615 + 4.A.3.2.2
TC HRGMv2_1458_25 HRGMv2_1458_25_9 10769 11071 + 4.A.3.2.9
TC HRGMv2_1458_25 HRGMv2_1458_25_10 11081 11413 + 4.A.3.2.3
STP HRGMv2_1458_25 HRGMv2_1458_25_11 11653 12606 + Glucokinase
pfam HRGMv2_1458_25 HRGMv2_1458_25_12 12773 13696 + DHH | DHHA2
TC HRGMv2_1458_25 HRGMv2_1458_25_13 13964 15322 + 2.A.33.1.1
Gene ID: HRGMv2_1458_25_7
Type: CAZyme
Location: 7742 - 9142 (+)
Gene ID: HRGMv2_1458_25_8
Type: TC
Location: 9263 - 10615 (+)
Gene ID: HRGMv2_1458_25_9
Type: TC
Location: 10769 - 11071 (+)
Gene ID: HRGMv2_1458_25_10
Type: TC
Location: 11081 - 11413 (+)
Gene ID: HRGMv2_1458_25_11
Type: STP
Location: 11653 - 12606 (+)
Gene ID: HRGMv2_1458_25_12
Type: pfam
Location: 12773 - 13696 (+)
Gene ID: HRGMv2_1458_25_13
Type: TC
Location: 13964 - 15322 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1458_25_9 vegan > omnivore 1.03000 0.00863

🧭 Explore Read Mapping of CGC

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