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Cluster: HRGMv2_1458_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1458_22 HRGMv2_1458_22_14 12583 13752 - CE9
STP HRGMv2_1458_22 HRGMv2_1458_22_15 13870 15036 - SIS | SIS
TF HRGMv2_1458_22 HRGMv2_1458_22_16 15151 15882 - GntR
TC HRGMv2_1458_22 HRGMv2_1458_22_17 16067 17149 - 4.A.6.1.4
TC HRGMv2_1458_22 HRGMv2_1458_22_18 17139 17939 - 4.A.6.1.4
TC HRGMv2_1458_22 HRGMv2_1458_22_19 18030 18512 - 4.A.6.1.4
pfam HRGMv2_1458_22 HRGMv2_1458_22_20 18549 18830 - YajC
TC HRGMv2_1458_22 HRGMv2_1458_22_21 18830 19273 - 4.A.6.1.16
Gene ID: HRGMv2_1458_22_14
Type: CAZyme
Location: 12583 - 13752 (-)
Gene ID: HRGMv2_1458_22_15
Type: STP
Location: 13870 - 15036 (-)
Gene ID: HRGMv2_1458_22_16
Type: TF
Location: 15151 - 15882 (-)
Gene ID: HRGMv2_1458_22_17
Type: TC
Location: 16067 - 17149 (-)
Gene ID: HRGMv2_1458_22_18
Type: TC
Location: 17139 - 17939 (-)
Gene ID: HRGMv2_1458_22_19
Type: TC
Location: 18030 - 18512 (-)
Gene ID: HRGMv2_1458_22_20
Type: pfam
Location: 18549 - 18830 (-)
Gene ID: HRGMv2_1458_22_21
Type: TC
Location: 18830 - 19273 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1458_22_20 vegan > omnivore 1.03714 0.00863

🧭 Explore Read Mapping of CGC

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