Cluster: HRGMv2_1458_CGC14
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1458
- CGC Family ID: CGCFAM_01153
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1458_48 | HRGMv2_1458_48_5 | 4473 | 5849 | - | 3.A.1.17.10 |
| NULL(UNKNOWN) | HRGMv2_1458_48 | HRGMv2_1458_48_6 | 5853 | 6908 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1458_48 | HRGMv2_1458_48_7 | 6911 | 8722 | - | 3.D.1.5.1 |
| STP | HRGMv2_1458_48 | HRGMv2_1458_48_8 | 8716 | 10548 | - | Pyr_redox_2 |
| CAZyme | HRGMv2_1458_48 | HRGMv2_1458_48_9 | 10805 | 12187 | - | GH4 |
| TC | HRGMv2_1458_48 | HRGMv2_1458_48_10 | 12191 | 13405 | - | 4.A.1.1.16 |
Gene ID: HRGMv2_1458_48_5
Type: TC
Location: 4473 - 5849 (-)
Type: TC
Location: 4473 - 5849 (-)
Gene ID: HRGMv2_1458_48_6
Type:
Location: 5853 - 6908 (-)
Type:
Location: 5853 - 6908 (-)
Gene ID: HRGMv2_1458_48_7
Type: TC
Location: 6911 - 8722 (-)
Type: TC
Location: 6911 - 8722 (-)
Gene ID: HRGMv2_1458_48_8
Type: STP
Location: 8716 - 10548 (-)
Type: STP
Location: 8716 - 10548 (-)
Gene ID: HRGMv2_1458_48_9
Type: CAZyme
Location: 10805 - 12187 (-)
Type: CAZyme
Location: 10805 - 12187 (-)
Gene ID: HRGMv2_1458_48_10
Type: TC
Location: 12191 - 13405 (-)
Type: TC
Location: 12191 - 13405 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019414465
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1458_48_6 | vegan > omnivore | 1.02692 | 0.00863 |