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Cluster: HRGMv2_1458_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1458_1 HRGMv2_1458_1_37 43239 43577 - 4.A.3.1.2
TF HRGMv2_1458_1 HRGMv2_1458_1_38 43792 44796 - LacI
TC HRGMv2_1458_1 HRGMv2_1458_1_39 45154 46929 + 4.A.3.1.1
CAZyme HRGMv2_1458_1 HRGMv2_1458_1_40 46996 48435 + GH1
TF HRGMv2_1458_1 HRGMv2_1458_1_41 48703 49740 - LacI
CAZyme HRGMv2_1458_1 HRGMv2_1458_1_42 50082 51524 + GH1
TC HRGMv2_1458_1 HRGMv2_1458_1_43 51701 53461 + 4.A.3.1.1
TF HRGMv2_1458_1 HRGMv2_1458_1_44 53719 54729 - LacI
TC HRGMv2_1458_1 HRGMv2_1458_1_45 55005 56783 + 4.A.3.1.1
CAZyme HRGMv2_1458_1 HRGMv2_1458_1_46 56860 58281 + GH1
Gene ID: HRGMv2_1458_1_37
Type: TC
Location: 43239 - 43577 (-)
Gene ID: HRGMv2_1458_1_38
Type: TF
Location: 43792 - 44796 (-)
Gene ID: HRGMv2_1458_1_39
Type: TC
Location: 45154 - 46929 (+)
Gene ID: HRGMv2_1458_1_40
Type: CAZyme
Location: 46996 - 48435 (+)
Gene ID: HRGMv2_1458_1_41
Type: TF
Location: 48703 - 49740 (-)
Gene ID: HRGMv2_1458_1_42
Type: CAZyme
Location: 50082 - 51524 (+)
Gene ID: HRGMv2_1458_1_43
Type: TC
Location: 51701 - 53461 (+)
Gene ID: HRGMv2_1458_1_44
Type: TF
Location: 53719 - 54729 (-)
Gene ID: HRGMv2_1458_1_45
Type: TC
Location: 55005 - 56783 (+)
Gene ID: HRGMv2_1458_1_46
Type: CAZyme
Location: 56860 - 58281 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1458_1_41 vegetarian > omnivore 1.03206 0.03181

🧭 Explore Read Mapping of CGC

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