Cluster: HRGMv2_1457_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1457
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1457_3 | HRGMv2_1457_3_3 | 1916 | 2557 | - | 4.A.1.2.6 |
| peptidase | HRGMv2_1457_3 | HRGMv2_1457_3_4 | 2726 | 3625 | + | S09.UPW |
| NULL(UNKNOWN) | HRGMv2_1457_3 | HRGMv2_1457_3_5 | 3673 | 3993 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1457_3 | HRGMv2_1457_3_6 | 4115 | 6475 | + | 9.A.8.1.6 |
| TC | HRGMv2_1457_3 | HRGMv2_1457_3_7 | 6600 | 7796 | + | 2.A.1.2.18 |
| CAZyme | HRGMv2_1457_3 | HRGMv2_1457_3_8 | 7950 | 9326 | + | GH13_20 |
Gene ID: HRGMv2_1457_3_3
Type: TC
Location: 1916 - 2557 (-)
Type: TC
Location: 1916 - 2557 (-)
Gene ID: HRGMv2_1457_3_4
Type: peptidase
Location: 2726 - 3625 (+)
Type: peptidase
Location: 2726 - 3625 (+)
Gene ID: HRGMv2_1457_3_5
Type:
Location: 3673 - 3993 (+)
Type:
Location: 3673 - 3993 (+)
Gene ID: HRGMv2_1457_3_6
Type: TC
Location: 4115 - 6475 (+)
Type: TC
Location: 4115 - 6475 (+)
Gene ID: HRGMv2_1457_3_7
Type: TC
Location: 6600 - 7796 (+)
Type: TC
Location: 6600 - 7796 (+)
Gene ID: HRGMv2_1457_3_8
Type: CAZyme
Location: 7950 - 9326 (+)
Type: CAZyme
Location: 7950 - 9326 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019414265
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.