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Cluster: HRGMv2_1457_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1457_2 HRGMv2_1457_2_68 70879 71322 + 4.A.6.1.16
pfam HRGMv2_1457_2 HRGMv2_1457_2_69 71322 71603 + YajC
TC HRGMv2_1457_2 HRGMv2_1457_2_70 71640 72122 + 4.A.6.1.4
TC HRGMv2_1457_2 HRGMv2_1457_2_71 72213 73013 + 4.A.6.1.4
TC HRGMv2_1457_2 HRGMv2_1457_2_72 73003 74085 + 4.A.6.1.4
TF HRGMv2_1457_2 HRGMv2_1457_2_73 74271 75002 + GntR
STP HRGMv2_1457_2 HRGMv2_1457_2_74 75117 76283 + SIS | SIS
CAZyme HRGMv2_1457_2 HRGMv2_1457_2_75 76401 77570 + CE9
Gene ID: HRGMv2_1457_2_68
Type: TC
Location: 70879 - 71322 (+)
Gene ID: HRGMv2_1457_2_69
Type: pfam
Location: 71322 - 71603 (+)
Gene ID: HRGMv2_1457_2_70
Type: TC
Location: 71640 - 72122 (+)
Gene ID: HRGMv2_1457_2_71
Type: TC
Location: 72213 - 73013 (+)
Gene ID: HRGMv2_1457_2_72
Type: TC
Location: 73003 - 74085 (+)
Gene ID: HRGMv2_1457_2_73
Type: TF
Location: 74271 - 75002 (+)
Gene ID: HRGMv2_1457_2_74
Type: STP
Location: 75117 - 76283 (+)
Gene ID: HRGMv2_1457_2_75
Type: CAZyme
Location: 76401 - 77570 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1457_2_69 vegan > omnivore 1.00422 0.00455

🧭 Explore Read Mapping of CGC

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