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Cluster: HRGMv2_1457_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1457_2 HRGMv2_1457_2_37 38663 40063 + GH1
TC HRGMv2_1457_2 HRGMv2_1457_2_38 40184 41536 + 4.A.3.2.2
TC HRGMv2_1457_2 HRGMv2_1457_2_39 41690 41992 + 4.A.3.2.9
TC HRGMv2_1457_2 HRGMv2_1457_2_40 42002 42334 + 4.A.3.2.3
STP HRGMv2_1457_2 HRGMv2_1457_2_41 42576 43529 + Glucokinase
pfam HRGMv2_1457_2 HRGMv2_1457_2_42 43696 44619 + DHH | DHHA2
TC HRGMv2_1457_2 HRGMv2_1457_2_43 44887 46245 + 2.A.33.1.1
Gene ID: HRGMv2_1457_2_37
Type: CAZyme
Location: 38663 - 40063 (+)
Gene ID: HRGMv2_1457_2_38
Type: TC
Location: 40184 - 41536 (+)
Gene ID: HRGMv2_1457_2_39
Type: TC
Location: 41690 - 41992 (+)
Gene ID: HRGMv2_1457_2_40
Type: TC
Location: 42002 - 42334 (+)
Gene ID: HRGMv2_1457_2_41
Type: STP
Location: 42576 - 43529 (+)
Gene ID: HRGMv2_1457_2_42
Type: pfam
Location: 43696 - 44619 (+)
Gene ID: HRGMv2_1457_2_43
Type: TC
Location: 44887 - 46245 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1457_2_39 vegan > omnivore 1.00251 0.00455

🧭 Explore Read Mapping of CGC

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