dbCAN Logo

Cluster: HRGMv2_1456_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1456_1 HRGMv2_1456_1_46 48200 48994 - 3.A.1.34.1
TC HRGMv2_1456_1 HRGMv2_1456_1_47 48987 49910 - 3.A.1.34.1
TC HRGMv2_1456_1 HRGMv2_1456_1_48 50115 51095 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_1456_1 HRGMv2_1456_1_49 51256 52041 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1456_1 HRGMv2_1456_1_50 52291 53694 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_1456_1 HRGMv2_1456_1_51 53875 54516 - 4.A.1.2.6
peptidase HRGMv2_1456_1 HRGMv2_1456_1_52 54685 55584 + S09.UPW
NULL(UNKNOWN) HRGMv2_1456_1 HRGMv2_1456_1_53 55632 55952 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1456_1 HRGMv2_1456_1_54 56074 58434 + 9.A.8.1.6
TC HRGMv2_1456_1 HRGMv2_1456_1_55 58558 59754 + 2.A.1.2.18
CAZyme HRGMv2_1456_1 HRGMv2_1456_1_56 59908 61284 + GH13_20
Gene ID: HRGMv2_1456_1_46
Type: TC
Location: 48200 - 48994 (-)
Gene ID: HRGMv2_1456_1_47
Type: TC
Location: 48987 - 49910 (-)
Gene ID: HRGMv2_1456_1_48
Type: TC
Location: 50115 - 51095 (-)
Gene ID: HRGMv2_1456_1_49
Type:
Location: 51256 - 52041 (-)
Gene ID: HRGMv2_1456_1_50
Type: pfam
Location: 52291 - 53694 (-)
Gene ID: HRGMv2_1456_1_51
Type: TC
Location: 53875 - 54516 (-)
Gene ID: HRGMv2_1456_1_52
Type: peptidase
Location: 54685 - 55584 (+)
Gene ID: HRGMv2_1456_1_53
Type:
Location: 55632 - 55952 (+)
Gene ID: HRGMv2_1456_1_54
Type: TC
Location: 56074 - 58434 (+)
Gene ID: HRGMv2_1456_1_55
Type: TC
Location: 58558 - 59754 (+)
Gene ID: HRGMv2_1456_1_56
Type: CAZyme
Location: 59908 - 61284 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List